SubtiBank SubtiBank
comGF [2017-12-14 12:04:47]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

comGF [2017-12-14 12:04:47]

DNA transport machinery
locus
BSU24680
pI
5.55
mw
14.14 kDa
protein length
127 aa Sequence Blast
gene length
381 bp Sequence Blast
function
genetic competence, DNA uptake
product
DNA transport machinery
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.7|Genetic competence]
  • [category|SW 4|Lifestyles] → [category|SW 4.1|Exponential and early post-exponential lifestyles] → [category|SW 4.1.3|Genetic competence]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    2,556,512 → 2,556,895

    The protein

    [SW|Localization]

  • integral membrane protein [Pubmed|9723928]

    • Expression and Regulation

    Operons

    genes
    [gene|41DFEF8A6BC7E34A6681C26D92F2B08DC120A957|comGA]-[gene|EA1C841FC77A1994A85E2E0C0A554482C3EC9323|comGB]-[gene|19D76B80386F825109C5FB4A34881D5D20F366DB|comGC]-[gene|D323AEF5AFB4FD2A074ABAB76A39BE26A4C6436F|comGD]-[gene|FF4DB7FDCEB440064E11E65CB0DBFB93FC785CF0|comGE]-[gene|DD266DC0D78B5C5E82EED7CC7F55D0CF8FB4BF7A|comGF]-[gene|89442BFDFBFF264D0C7F12DEA6F8130C55D1F3F8|comGG]-[gene|8F3751A3D0910C9BED7FBCE90AFF7FDACFDCBC0B|spoIIIL]
    description
    [Pubmed|26735940,2507524]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|2507524], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [Pubmed|26735940], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]

    • regulatory mechanism

  • [protein|08CFA2C72931A75532D4289BC1D18A826DE9F9CA|ComK]: activation, [Pubmed|8196543], in [regulon|08CFA2C72931A75532D4289BC1D18A826DE9F9CA|ComK regulon]

    • regulation

  • expressed early during sporulation in the forespore ([protein|search|SigF]) [Pubmed|26735940]

    • additional information

  • the ''[SW|comGA]-[SW|comGB]-[SW|comGC]-[SW|comGD]-[SW|comGE]-[SW|comGF]-[SW|comGG]-[protein|search|spoIIIL]'' operon requires [SW|NusA] for expression [http://www.nature.com/articles/nmicrobiol20157 Reference]
    • view in new tab

    Biological materials

    Mutant

  • BKE24680 (Δ[gene|DD266DC0D78B5C5E82EED7CC7F55D0CF8FB4BF7A|comGF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE24680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAAGACTGAGAGCGAAA, downstream forward: _UP4_TGAATGTATCGTACAAGAGG
  • BKK24680 (Δ[gene|DD266DC0D78B5C5E82EED7CC7F55D0CF8FB4BF7A|comGF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK24680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAAGACTGAGAGCGAAA, downstream forward: _UP4_TGAATGTATCGTACAAGAGG

    • References

  • 9422590,9723928,11814663,12107147,2507524,8196543